HL_4DV1_008

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV1_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0755

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4DV1|1|A|C|320
4DV1|1|A|A|321
4DV1|1|A|C|322
4DV1|1|A|U|323
4DV1|1|A|G|324
4DV1|1|A|A|325
4DV1|1|A|G|326
4DV1|1|A|A|327
4DV1|1|A|C|328
4DV1|1|A|A|329
4DV1|1|A|C|330
4DV1|1|A|G|331
4DV1|1|A|G|332
4DV1|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20