HL_4DV1_025

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4DV1|1|A|U|1136, 4DV1|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV1_025 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3184

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4DV1|1|A|G|1134
4DV1|1|A|U|1135
4DV1|1|A|U|1136
4DV1|1|A|C|1137
4DV1|1|A|G|1138
4DV1|1|A|G|1139
4DV1|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9