HL_4DV1_035

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CCAGCGGUUCGGCCGG

Length

16 nucleotides

Bulged bases

4DV1|1|A|U|1136, 4DV1|1|A|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DV1|1|A|C|1128
4DV1|1|A|C|1129
4DV1|1|A|A|1130
4DV1|1|A|G|1131
4DV1|1|A|C|1132
4DV1|1|A|G|1133
4DV1|1|A|G|1134
4DV1|1|A|U|1135
4DV1|1|A|U|1136
4DV1|1|A|C|1137
4DV1|1|A|G|1138
4DV1|1|A|G|1139
4DV1|1|A|C|1140
4DV1|1|A|C|1141
4DV1|1|A|G|1142
4DV1|1|A|G|1143

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9