HL_4DV2_032
3D structure
- PDB id
- 4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CCGG(MA6)(MA6)(MA6)(MA6)GG
- Length
- 10 nucleotides
- Bulged bases
- 4DV2|1|A|G|1517||A
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4DV2_032 not in the Motif Atlas
- Geometric match to HL_2AZX_004
- Geometric discrepancy: 0.3956
- The information below is about HL_2AZX_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4DV2|1|A|C|1514
4DV2|1|A|C|1515||A
4DV2|1|A|G|1516||A
4DV2|1|A|G|1517||A
4DV2|1|A|MA6|1518||B
4DV2|1|A|MA6|1518||A
4DV2|1|A|MA6|1519||B
4DV2|1|A|MA6|1519||A
4DV2|1|A|G|1520||A
4DV2|1|A|G|1521
Current chains
- Chain A
- 16S rRNA
Nearby chains
No other chains within 10ÅColoring options: