HL_4DV4_023

3D structure

PDB id

4DV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCCCGCGAGGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV4_023 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3984

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4DV4|1|A|C|1027
4DV4|1|A|C|1028
4DV4|1|A|C|1029
4DV4|1|A|C|1030
4DV4|1|A|G|1030|||A
4DV4|1|A|C|1030|||B
4DV4|1|A|G|1030|||C
4DV4|1|A|A|1030|||D
4DV4|1|A|G|1031
4DV4|1|A|G|1032
4DV4|1|A|G|1033
4DV4|1|A|G|1034

Current chains

Chain A

16S rRNA

Nearby chains