HL_4DV5_027

3D structure

PDB id

4DV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CGCGAAAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV5_027 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.289

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4DV5|1|A|C|1163
4DV5|1|A|G|1164
4DV5|1|A|C|1165
4DV5|1|A|G|1166
4DV5|1|A|A|1167
4DV5|1|A|A|1168
4DV5|1|A|A|1169
4DV5|1|A|G|1171
4DV5|1|A|C|1172
4DV5|1|A|G|1173

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain G

ribosomal protein S7