HL_4DV7_023

3D structure

PDB id

4DV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV7_023 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3902

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4DV7|1|A|C|1029
4DV7|1|A|C|1030
4DV7|1|A|G|1030|||A
4DV7|1|A|C|1030|||B
4DV7|1|A|G|1030|||C
4DV7|1|A|A|1030|||D
4DV7|1|A|G|1031
4DV7|1|A|G|1032

Current chains

Chain A

16S rRNA

Nearby chains