HL_4E8K_004

3D structure

PDB id

4E8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGAACAC

Length

7 nucleotides

Bulged bases

4E8K|1|A|A|137, 4E8K|1|A|A|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8K_004 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.1615

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

4E8K|1|A|G|135
4E8K|1|A|G|136
4E8K|1|A|A|137
4E8K|1|A|A|138
4E8K|1|A|C|139
4E8K|1|A|A|140
4E8K|1|A|C|141

Current chains

Chain A

Group IIC intron

Nearby chains