HL_4E8K_005

3D structure

PDB id

4E8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

4E8K|1|A|G|179, 4E8K|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8K_005 not in the Motif Atlas

Homologous match to HL_5J02_005

Geometric discrepancy: 0.1392

The information below is about HL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8K|1|A|U|178
4E8K|1|A|G|179
4E8K|1|A|C|180
4E8K|1|A|A|181
4E8K|1|A|U|182
4E8K|1|A|A|183
4E8K|1|A|A|184
4E8K|1|A|C|185
4E8K|1|A|A|186
4E8K|1|A|A|187

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3'