HL_4E8M_004

3D structure

PDB id

4E8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAACAC

Length

7 nucleotides

Bulged bases

4E8M|1|A|A|137, 4E8M|1|A|A|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8M_004 not in the Motif Atlas

Homologous match to HL_5J02_004

Geometric discrepancy: 0.2388

The information below is about HL_5J02_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8M|1|A|G|135
4E8M|1|A|G|136
4E8M|1|A|A|137
4E8M|1|A|A|138
4E8M|1|A|C|139
4E8M|1|A|A|140
4E8M|1|A|C|141

Current chains

Chain A

Group IIC intron

Nearby chains