HL_4E8N_005

3D structure

PDB id

4E8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

4E8N|1|A|G|179, 4E8N|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8N_005 not in the Motif Atlas

Homologous match to HL_5J02_005

Geometric discrepancy: 0.1779

The information below is about HL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8N|1|A|U|178
4E8N|1|A|G|179
4E8N|1|A|C|180
4E8N|1|A|A|181
4E8N|1|A|U|182
4E8N|1|A|A|183
4E8N|1|A|A|184
4E8N|1|A|C|185
4E8N|1|A|A|186
4E8N|1|A|A|187

Current chains

Chain A

Group IIC intron

Nearby chains