HL_4E8Q_008

3D structure

PDB id

4E8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

4E8Q|1|A|U|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8Q_008 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.1325

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4E8Q|1|A|G|338
4E8Q|1|A|U|339
4E8Q|1|A|U|340
4E8Q|1|A|C|341
4E8Q|1|A|G|342
4E8Q|1|A|C|343

Current chains

Chain A

Group IIC intron

Nearby chains