HL_4E8R_008

3D structure

PDB id

4E8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

4E8R|1|A|U|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8R_008 not in the Motif Atlas

Geometric match to HL_4V88_196

Geometric discrepancy: 0.1844

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4E8R|1|A|G|338
4E8R|1|A|U|339
4E8R|1|A|U|340
4E8R|1|A|C|341
4E8R|1|A|G|342
4E8R|1|A|C|343

Current chains

Chain A

Group IIC intron

Nearby chains