HL_4EN5_001

3D structure

PDB id

4EN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of fluoride riboswitch, Tl-Acetate soaked

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GAUGAGGCCC

Length

10 nucleotides

Bulged bases

4EN5|1|A|A|6, 4EN5|1|A|U|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4EN5_001 not in the Motif Atlas

Homologous match to HL_4ENC_001

Geometric discrepancy: 0.1786

The information below is about HL_4ENC_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4EN5|1|A|G|5
4EN5|1|A|A|6
4EN5|1|A|U|7
4EN5|1|A|G|8
4EN5|1|A|A|9
4EN5|1|A|G|10
4EN5|1|A|G|11
4EN5|1|A|C|12
4EN5|1|A|C|13
4EN5|1|A|C|14

Current chains

Chain A

Fluoride riboswitch

Nearby chains