HL_4FAQ_004

3D structure

PDB id

4FAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GGAACAC

Length

7 nucleotides

Bulged bases

4FAQ|1|A|A|137, 4FAQ|1|A|A|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FAQ_004 not in the Motif Atlas

Homologous match to HL_5J02_004

Geometric discrepancy: 0.2545

The information below is about HL_5J02_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAQ|1|A|G|135
4FAQ|1|A|G|136
4FAQ|1|A|A|137
4FAQ|1|A|A|138
4FAQ|1|A|C|139
4FAQ|1|A|A|140
4FAQ|1|A|C|141

Current chains

Chain A

Group IIC intron

Nearby chains