HL_4FAQ_005

3D structure

PDB id

4FAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

4FAQ|1|A|G|179, 4FAQ|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FAQ_005 not in the Motif Atlas

Homologous match to HL_5J02_005

Geometric discrepancy: 0.1833

The information below is about HL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAQ|1|A|U|178
4FAQ|1|A|G|179
4FAQ|1|A|C|180
4FAQ|1|A|A|181
4FAQ|1|A|U|182
4FAQ|1|A|A|183
4FAQ|1|A|A|184
4FAQ|1|A|C|185
4FAQ|1|A|A|186
4FAQ|1|A|A|187

Current chains

Chain A

Group IIC intron

Nearby chains