HL_4FAQ_006

3D structure

PDB id

4FAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FAQ_006 not in the Motif Atlas

Geometric match to HL_3IGI_006

Geometric discrepancy: 0.0965

The information below is about HL_3IGI_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4FAQ|1|A|G|274
4FAQ|1|A|G|275
4FAQ|1|A|A|276
4FAQ|1|A|A|277
4FAQ|1|A|A|278
4FAQ|1|A|C|279

Current chains

Chain A

Group IIC intron

Nearby chains