HL_4FAR_008

3D structure

PDB id

4FAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GUUCGC

Length

6 nucleotides

Bulged bases

4FAR|1|A|U|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FAR_008 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.2649

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4FAR|1|A|G|338
4FAR|1|A|U|339
4FAR|1|A|U|340
4FAR|1|A|C|341
4FAR|1|A|G|342
4FAR|1|A|C|343

Current chains

Chain A

Group IIC intron

Nearby chains