HL_4FAU_005

3D structure

PDB id

4FAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.87 Å

Loop

Sequence

UGCAUAACAA

Length

10 nucleotides

Bulged bases

4FAU|1|A|G|179, 4FAU|1|A|C|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FAU_005 not in the Motif Atlas

Homologous match to HL_5J02_005

Geometric discrepancy: 0.1285

The information below is about HL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAU|1|A|U|178
4FAU|1|A|G|179
4FAU|1|A|C|180
4FAU|1|A|A|181
4FAU|1|A|U|182
4FAU|1|A|A|183
4FAU|1|A|A|184
4FAU|1|A|C|185
4FAU|1|A|A|186
4FAU|1|A|A|187

Current chains

Chain A

Group IIC intron

Nearby chains