HL_4FAX_006

3D structure

PDB id

4FAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4FAX_006 not in the Motif Atlas

Geometric match to HL_3IGI_006

Geometric discrepancy: 0.073

The information below is about HL_3IGI_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4FAX|1|A|G|274
4FAX|1|A|G|275
4FAX|1|A|A|276
4FAX|1|A|A|277
4FAX|1|A|A|278
4FAX|1|A|C|279

Current chains

Chain A

Group IIC intron

Nearby chains