HL_4GKJ_018

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

4GKJ|1|A|U|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4GKJ_018 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.2139

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4GKJ|1|A|G|821
4GKJ|1|A|U|822
4GKJ|1|A|C|823
4GKJ|1|A|U|824
4GKJ|1|A|C|825

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2