HL_4GKJ_026

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4GKJ|1|A|U|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4GKJ_026 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.2379

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4GKJ|1|A|G|1116
4GKJ|1|A|U|1117
4GKJ|1|A|U|1118
4GKJ|1|A|C|1119
4GKJ|1|A|G|1120
4GKJ|1|A|G|1121
4GKJ|1|A|C|1122

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9