HL_4GKJ_030
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 4GKJ|1|A|U|1346
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4GKJ_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0663
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4GKJ|1|A|G|1337
4GKJ|1|A|A|1338
4GKJ|1|A|U|1339
4GKJ|1|A|C|1340
4GKJ|1|A|A|1341
4GKJ|1|A|G|1342
4GKJ|1|A|C|1343
4GKJ|1|A|C|1344
4GKJ|1|A|A|1345
4GKJ|1|A|U|1346
4GKJ|1|A|G|1347
4GKJ|1|A|C|1348
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain V
- 30S ribosomal protein Thx
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