3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUUG
Length
5 nucleotides
Bulged bases
4GKK|1|A|U|208, 4GKK|1|A|U|210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4GKK_005 not in the Motif Atlas
Homologous match to HL_4LFB_005
Geometric discrepancy: 0.1814
The information below is about HL_4LFB_005
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

4GKK|1|A|C|207
4GKK|1|A|U|208
4GKK|1|A|U|209
4GKK|1|A|U|210
4GKK|1|A|G|211

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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