HL_4GKK_026

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4GKK|1|A|U|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4GKK_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.1477

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

4GKK|1|A|G|1116
4GKK|1|A|U|1117
4GKK|1|A|U|1118
4GKK|1|A|C|1119
4GKK|1|A|G|1120
4GKK|1|A|G|1121
4GKK|1|A|C|1122

Current chains

Chain A

16S rRNA

Nearby chains