3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAUCAGCCAUGC
Length
12 nucleotides
Bulged bases
4GKK|1|A|U|1346
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4GKK_030 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.0694
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4GKK|1|A|G|1337
4GKK|1|A|A|1338
4GKK|1|A|U|1339
4GKK|1|A|C|1340
4GKK|1|A|A|1341
4GKK|1|A|G|1342
4GKK|1|A|C|1343
4GKK|1|A|C|1344
4GKK|1|A|A|1345
4GKK|1|A|U|1346
4GKK|1|A|G|1347
4GKK|1|A|C|1348

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14 type Z
Chain V
30S ribosomal protein Thx

Coloring options:


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