HL_4IFD_001

3D structure

PDB id

4IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.81 Å

Loop

Sequence

CGAGA*G

Length

6 nucleotides

Bulged bases

4IFD|1|R|A|-37, 4IFD|1|R|A|-37

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IFD_001 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2411

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4IFD|1|R|C|-41
4IFD|1|R|G|-40
4IFD|1|R|A|-37
4IFD|1|R|G|-36
4IFD|1|R|A|-37
*
4IFD|1|R|G|-36

Current chains

Chain R

RNA (45-MER)

Nearby chains

Chain H

Exosome complex component RRP4