HL_4IO9_004

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_004 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.254

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

4IO9|1|X|C|133
4IO9|1|X|G|134
4IO9|1|X|U|135
4IO9|1|X|A|136
4IO9|1|X|A|137
4IO9|1|X|G|138

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain V

50S ribosomal protein L29