HL_4IO9_011

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

4IO9|1|X|G|340, 4IO9|1|X|A|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_011 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2714

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

4IO9|1|X|G|338
4IO9|1|X|U|339
4IO9|1|X|G|340
4IO9|1|X|A|341
4IO9|1|X|G|342
4IO9|1|X|A|343
4IO9|1|X|G|344
4IO9|1|X|U|345
4IO9|1|X|C|346

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24