HL_4IO9_012

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

4IO9|1|X|G|399, 4IO9|1|X|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.1366

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4IO9|1|X|G|395
4IO9|1|X|U|396
4IO9|1|X|U|397
4IO9|1|X|C|398
4IO9|1|X|G|399
4IO9|1|X|U|400
4IO9|1|X|G|401
4IO9|1|X|A|402
4IO9|1|X|A|403
4IO9|1|X|A|404
4IO9|1|X|C|405

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L28