HL_4IO9_019

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_019 not in the Motif Atlas

Homologous match to HL_7RQB_020

Geometric discrepancy: 0.1034

The information below is about HL_7RQB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4IO9|1|X|C|640
4IO9|1|X|G|641
4IO9|1|X|A|642
4IO9|1|X|A|643
4IO9|1|X|A|644
4IO9|1|X|G|645

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15