HL_4IO9_020

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

4IO9|1|X|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_020 not in the Motif Atlas

Homologous match to HL_7A0S_021

Geometric discrepancy: 0.3007

The information below is about HL_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81314.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4IO9|1|X|C|651
4IO9|1|X|C|652
4IO9|1|X|G|653
4IO9|1|X|A|654
4IO9|1|X|A|655
4IO9|1|X|U|656
4IO9|1|X|A|657
4IO9|1|X|G|658

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35