HL_4IO9_021

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGACAG

Length

8 nucleotides

Bulged bases

4IO9|1|X|U|727

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_021 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1179

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

4IO9|1|X|C|725
4IO9|1|X|G|726
4IO9|1|X|U|727
4IO9|1|X|G|728
4IO9|1|X|A|729
4IO9|1|X|C|730
4IO9|1|X|A|731
4IO9|1|X|G|732

Current chains

Chain X

23S ribosomal RNA

Nearby chains