HL_4IO9_025

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUAAAAC

Length

8 nucleotides

Bulged bases

4IO9|1|X|A|891

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_025 not in the Motif Atlas

Homologous match to HL_7A0S_025

Geometric discrepancy: 0.5053

The information below is about HL_7A0S_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IO9|1|X|G|888
4IO9|1|X|C|889
4IO9|1|X|U|890
4IO9|1|X|A|891
4IO9|1|X|A|911
4IO9|1|X|A|912
4IO9|1|X|A|913
4IO9|1|X|C|914

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25