HL_4IO9_035
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAUGGCUAUG
- Length
- 11 nucleotides
- Bulged bases
- 4IO9|1|X|A|1468, 4IO9|1|X|U|1469, 4IO9|1|X|U|1475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4IO9_035 not in the Motif Atlas
- Homologous match to HL_7A0S_036
- Geometric discrepancy: 0.2759
- The information below is about HL_7A0S_036
- Detailed Annotation
- Pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- HL_00824.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4IO9|1|X|C|1466
4IO9|1|X|U|1467
4IO9|1|X|A|1468
4IO9|1|X|U|1469
4IO9|1|X|G|1470
4IO9|1|X|G|1471
4IO9|1|X|C|1472
4IO9|1|X|U|1473
4IO9|1|X|A|1474
4IO9|1|X|U|1475
4IO9|1|X|G|1476
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L17
Coloring options: