HL_4IO9_047

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4IO9|1|X|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_047 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0864

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4IO9|1|X|G|1932
4IO9|1|X|G|1933
4IO9|1|X|U|1934
4IO9|1|X|A|1935
4IO9|1|X|A|1936
4IO9|1|X|G|1937
4IO9|1|X|U|1938
4IO9|1|X|U|1939
4IO9|1|X|C|1940

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L14