HL_4IO9_048

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

4IO9|1|X|A|2013, 4IO9|1|X|A|2014, 4IO9|1|X|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4IO9_048 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.1898

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4IO9|1|X|G|2010
4IO9|1|X|U|2011
4IO9|1|X|A|2012
4IO9|1|X|A|2013
4IO9|1|X|A|2014
4IO9|1|X|G|2015
4IO9|1|X|A|2016
4IO9|1|X|U|2017
4IO9|1|X|G|2018
4IO9|1|X|C|2019

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32