HL_4JI2_008

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI2_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0749

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4JI2|1|A|C|320
4JI2|1|A|A|321
4JI2|1|A|C|322
4JI2|1|A|U|323
4JI2|1|A|G|324
4JI2|1|A|A|325
4JI2|1|A|G|326
4JI2|1|A|A|327
4JI2|1|A|C|328
4JI2|1|A|A|329
4JI2|1|A|C|330
4JI2|1|A|G|331
4JI2|1|A|G|332
4JI2|1|A|G|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20