HL_4JI2_013

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI2_013 not in the Motif Atlas

Homologous match to HL_4LFB_013

Geometric discrepancy: 0.1018

The information below is about HL_4LFB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI2|1|A|G|521
4JI2|1|A|C|522
4JI2|1|A|A|523
4JI2|1|A|G|524
4JI2|1|A|C|525
4JI2|1|A|C|526
4JI2|1|A|7MG|527
4JI2|1|A|C|528

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN S3

Chain L

RIBOSOMAL PROTEIN S12