HL_4JI3_029

3D structure

PDB id

4JI3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI3_029 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0828

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4JI3|1|A|C|1314
4JI3|1|A|U|1315
4JI3|1|A|G|1316
4JI3|1|A|C|1317
4JI3|1|A|A|1318
4JI3|1|A|A|1319
4JI3|1|A|C|1320
4JI3|1|A|C|1321
4JI3|1|A|C|1322
4JI3|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN S13

Chain N

RIBOSOMAL PROTEIN S14

Chain S

RIBOSOMAL PROTEIN S19