HL_4JI4_008
3D structure
- PDB id
- 4JI4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.69 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4JI4_008 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.0827
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4JI4|1|A|C|320
4JI4|1|A|A|321
4JI4|1|A|C|322
4JI4|1|A|U|323
4JI4|1|A|G|324
4JI4|1|A|A|325
4JI4|1|A|G|326
4JI4|1|A|A|327
4JI4|1|A|C|328
4JI4|1|A|A|329
4JI4|1|A|C|330
4JI4|1|A|G|331
4JI4|1|A|G|332
4JI4|1|A|G|333
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- RIBOSOMAL PROTEIN S16
- Chain T
- RIBOSOMAL PROTEIN S20
Coloring options: