HL_4JI4_034

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4JI4|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI4_034 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.2124

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

4JI4|1|A|C|419
4JI4|1|A|U|420
4JI4|1|A|U|421
4JI4|1|A|C|422
4JI4|1|A|G|423
4JI4|1|A|G|424

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN S3

Chain D

RIBOSOMAL PROTEIN S4