HL_4JI5_033

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4JI5|1|A|U|1136, 4JI5|1|A|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI5_033 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3312

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI5|1|A|G|1134
4JI5|1|A|U|1135
4JI5|1|A|U|1136
4JI5|1|A|C|1137
4JI5|1|A|G|1138
4JI5|1|A|G|1139
4JI5|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN S9