HL_4JI6_013

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI6_013 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2287

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4JI6|1|A|G|521
4JI6|1|A|C|522
4JI6|1|A|A|523
4JI6|1|A|G|524
4JI6|1|A|C|525
4JI6|1|A|C|526
4JI6|1|A|7MG|527
4JI6|1|A|C|528

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN S3

Chain L

RIBOSOMAL PROTEIN S12