HL_4JI6_030

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4JI6|1|A|A|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI6_030 not in the Motif Atlas

Homologous match to HL_4LFB_031

Geometric discrepancy: 0.1475

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4JI6|1|A|C|1449
4JI6|1|A|U|1450
4JI6|1|A|A|1451
4JI6|1|A|C|1452
4JI6|1|A|G|1453
4JI6|1|A|G|1454

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20