HL_4JI6_031

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CCGG(MA6)(MA6)(MA6)(MA6)GG

Length

10 nucleotides

Bulged bases

4JI6|1|A|G|1517||A

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI6_031 not in the Motif Atlas

Geometric match to HL_2AZX_004

Geometric discrepancy: 0.3492

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4JI6|1|A|C|1514
4JI6|1|A|C|1515||A
4JI6|1|A|G|1516||A
4JI6|1|A|G|1517||A
4JI6|1|A|MA6|1518||A
4JI6|1|A|MA6|1518||B
4JI6|1|A|MA6|1519||A
4JI6|1|A|MA6|1519||B
4JI6|1|A|G|1520||A
4JI6|1|A|G|1521

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN S11