HL_4JI8_028
3D structure
- PDB id
- 4JI8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4JI8_028 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.1131
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4JI8|1|A|C|1314
4JI8|1|A|U|1315
4JI8|1|A|G|1316
4JI8|1|A|C|1317
4JI8|1|A|A|1318
4JI8|1|A|A|1319
4JI8|1|A|C|1320
4JI8|1|A|C|1321
4JI8|1|A|C|1322
4JI8|1|A|G|1323
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- RIBOSOMAL PROTEIN S13
- Chain N
- RIBOSOMAL PROTEIN S14
- Chain S
- RIBOSOMAL PROTEIN S19
Coloring options: