HL_4JV5_008

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JV5_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0668

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4JV5|1|A|C|320
4JV5|1|A|A|321
4JV5|1|A|C|322
4JV5|1|A|U|323
4JV5|1|A|G|324
4JV5|1|A|A|325
4JV5|1|A|G|326
4JV5|1|A|A|327
4JV5|1|A|C|328
4JV5|1|A|A|329
4JV5|1|A|C|330
4JV5|1|A|G|331
4JV5|1|A|G|332
4JV5|1|A|G|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein 20