HL_4JV5_025

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CCAGCGGUUCGGCCGG

Length

16 nucleotides

Bulged bases

4JV5|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JV5|1|A|C|1128
4JV5|1|A|C|1129
4JV5|1|A|A|1130
4JV5|1|A|G|1131
4JV5|1|A|C|1132
4JV5|1|A|G|1133
4JV5|1|A|G|1134
4JV5|1|A|U|1135
4JV5|1|A|U|1136
4JV5|1|A|C|1137
4JV5|1|A|G|1138
4JV5|1|A|G|1139
4JV5|1|A|C|1140
4JV5|1|A|C|1141
4JV5|1|A|G|1142
4JV5|1|A|G|1143

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10