HL_4KHP_012

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4KHP|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KHP_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.1017

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4KHP|1|A|C|453
4KHP|1|A|G|454
4KHP|1|A|A|455
4KHP|1|A|C|456
4KHP|1|A|G|457
4KHP|1|A|A|458
4KHP|1|A|G|459

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain P

30S Ribosomal protein S16